Cue factors

  • Venue: EMBL
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Our genes were once thought to be responsible for shaping who we are. But now scientists are having a rethink. Thanks to a glut of data from new sequencing projects, researchers are beginning to recognise that the regions of the human genome that encode proteins are unlikely to be behind the millions of differences between people.

So the question remains: what accounts for these differences? Searching for an answer, biologists have pored over the few individual genome sequences that have been completed so far. And these researchers have asked: if the rare stretches of DNA that code for proteins are not responsible for many of the differences found between humans, then what about the remaining 98% of the genome that does not encode proteins – the so-called non-coding DNA?

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Surviving drought

  • Venue: EMBL
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We’ve all felt it: a quickening of the heart and a slight shortness of breath as you walk into an exam room. Most of us recognise that the hormone adrenaline is responsible for this reaction, but we’re not unique in responding to stress with a release of hormones.

Plants do this too – but unlike you and I, they don’t have the option to flee; rooted to the spot, they can only stay and fight it out. To do this, plants release the hormone abscisic acid (ABA), which coordinates their response to stresses such as drought, extreme temperature and high salt levels.

ABA acts as a chemical courier, relaying messages from one cell to another. Cells respond to the hormone if they possess a receptor, which, once bound to the hormone, signals to the cell to go on the offensive. For plants, this means closing the tiny holes in their leaves to avoid water loss, diverting resources to their roots to increase water uptake and switching on the production of proteins that protect cells from dehydration.

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Aberrant appendages

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Having a second pair of hands might seem like an advantage but animals born with extra limbs, because of changes in their DNA, generally do not fair well. For more than 25 years, scientists have known about the existence of a mutation in a fruit fly gene that causes just such aberrant appendages, yet the identity of this
gene remained a mystery.

That is until developmental biologist Jürg Müller and his team at EMBL Heidelberg set out to find the gene responsible. By comparing the DNA of mutant and normal flies, Jürg’s group pinpointed the mutation and found that it disrupts the genetic code for the protein Ogt, an enzyme that sticks sugar molecules to the outside of proteins.

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Pinning the tail on the histone

  • Venue: EMBL
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Nearly 60 years ago, Pamela Lewis, a geneticist at the California Institute of Technology in Pasadena, noticed that some of the flies she was experimenting on had tiny comb-like structures on their second and third pairs of legs, and not
just the first pair as is usual.

Lewis called these structures ‘sex-combs‘ because males use them to grasp females during mating and she went on to discover the first Polycomb gene, one of many such genes now known to encode proteins that disrupt head to-tail body patterning in a variety of animals, ranging from humans to fruit flies to worms.

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Waxing cutaneous

  • Venue: EMBL
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When we’re in the bath, our skin prevents both water from moving into our bodies and essential nutrients from leaching into the tub. But because most of us don’t spend our entire lives submerged underwater, our skin’s chief role is to control how much water evaporates from our bodies. In fact, the skin’s role as a semi-impermeable barrier to fluid loss is so important that people suffering from serious burns often die, not as a direct consequence of their injuries, but from de hydration.

Each of us is covered by about 2 square meters of skin – about the area of a queen-size bed. For this waterproof suit to do its job, stem cells at the base of the skin replenish the layers above by producing a continuous stream of new cells initially like themselves and then a variety of specialised cell types. As a result of this continuous production, the specialised cells – which are destined to become the different layers of skin – move outwards until they are finally shed.

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Decloaking the germ

  • Venue: EMBL
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The bacterium Listeria infects humans through contaminated food. Once in the gut, this pathogen can be life-threatening if contracted during pregnancy or by newborns and those with weakened immune systems.

But for most people, an encounter with Listeria causes nothing more than vomiting and diarrhoea because our immune system recognises the
long, propeller-like projections on the bacterial surface – called flagella – and
mounts an assault on Listeria until it is wiped out. Listeria, however, has evolved a way to dodge this fate.

To anyone who has ever tried to cross enemy lines, this bacterium has an enviable ruse. After detecting the warmth of the human body, Listeria shuts down the production of flagella – the equivalent of enveloping itself in an invisible cloak. It does this by activating a protein called motility gene repressor, or MogR for short, which binds to DNA close to the flagella gene and suppresses it.

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A nervous switch

  • Venue: EMBL
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In 1863 a Heidelberg doctor described a devastating neurodegenerative condition that causes children to forget how to walk and talk before their teens.

The symptoms begin with muscle weakness, poor balance and a slurring of speech, and develop into a gradual breakdown in all motor control.

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Open Science

  • Venue: CBC
  • enclosure: http://www.jennycarpenter.com/wp-content/uploads/2009/11/JenniferCarpenter_SparkCBC_7.52minutes_041009.mp3 7555253 audio/mpeg
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What is open science? I talk to Michael Nielsen about Open Notebook Science, the Galaxy Zoo Project and the Open Dinosaur Project for CBC’s Spark to get at what happens when science opens up to everyone by moving online.

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Forensic linguistics and sentiment analysis

  • Venue: CBC
  • enclosure: http://www.jennycarpenter.com/wp-content/uploads/2009/11/JenniferCarpenter_SparkCBC_4.46minutes_240609.mp3 4597314 audio/mpeg
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What do your text messages say about you? I investigate forensic linguistics and sentiment analysis for CBC’s Spark.

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